RnoEX6016717 @ rn6
Exon Skipping
Gene
ENSRNOG00000005021 | Orc4
Description
origin recognition complex, subunit 4 [Source:RGD Symbol;Acc:735212]
Coordinates
chr3:33055464-33058993:-
Coord C1 exon
chr3:33058918-33058993
Coord A exon
chr3:33058459-33058544
Coord C2 exon
chr3:33055464-33055512
Length
86 bp
Sequences
Splice sites
3' ss Seq
TATTAATTGGTCTGTTTCAGGAC
3' ss Score
9.72
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
TTATTAAATCATGCCTTGAAAGAGCTCATGCAAATAGGAGACATGAGTGAAAATGTGTTACAAGTTCACTTAAATG
Seq A exon
GACTGCTACAGACAAATGATAAAATTGCTCTGAAAGAGATCACAAGACAATTAAATCTAGAAAATGTAGTTGGAGATAAAGTTTTT
Seq C2 exon
GGAAGCTTTGCTGAAAACCTTTCGTTTCTTCTGGAAGCTTTGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005021-'11-13,'11-10,12-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=FE(16.1=100)
A:
PF131911=AAA_16=FE(18.1=100)
C2:
PF131911=AAA_16=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCATGCCTTGAAAGAGCTCA
R:
CTTTCTGCAAAGCTTCCAGAAGA
Band lengths:
119-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]