BtaEX0025446 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019146 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr17:71883414-71885923:+
Coord C1 exon
chr17:71883414-71883659
Coord A exon
chr17:71885449-71885569
Coord C2 exon
chr17:71885820-71885923
Length
121 bp
Sequences
Splice sites
3' ss Seq
ACCCGTGGGCCTGGTCTCAGGTG
3' ss Score
6
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
GTGAACTTCAACGAGCCCCTGTCCATGCTCCAGCGGCTGACGGAGGACCTGGAGTACCACCGCCTGCTGGACGCGGCGGCGCGCTGCGGCAGCACAGTGGAGCAGATGTGCCTGGTGGCCGCCTTCTCCGTGTCTTCCTACTCCACCACCGTGCACCGCATCGCCAAGCCCTTCAACCCCATGCTGGGCGAGACCTTCGAGCTGGACCGTCTCGATGACATGGGCCTGCGCTCCCTCTGCGAGCAG
Seq A exon
GTGAGTCACCACCCACCGTCCGCCGCGCACTACGTGTTTTCCAAGCATGGCTGGAGCCTCTGGCAGGAGATCACCATCGCCAGCAAGTTCCGGGGGAAATACCTCTCCATCATGCCGCTAG
Seq C2 exon
GTGCTATCCACTTAGAATTCCAGGCCAGTGGGAATCACTACGTATGGAGGAAAAGCACCTCGACTGTGCATAACATCATTGTGGGCAAGCTCTGGATTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019146-'24-15,'24-13,25-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(21.3=100)
A:
PF0123713=Oxysterol_BP=FE(10.5=100)
C2:
PF0123713=Oxysterol_BP=FE(8.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACAGTGGAGCAGATGTG
R:
CCAGAGCTTGCCCACAATGAT
Band lengths:
252-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development