MmuEX0033182 @ mm9
Exon Skipping
Gene
ENSMUSG00000020435 | Osbp2
Description
oxysterol binding protein 2 [Source:MGI Symbol;Acc:MGI:1921559]
Coordinates
chr11:3612129-3614719:-
Coord C1 exon
chr11:3614474-3614719
Coord A exon
chr11:3612462-3612582
Coord C2 exon
chr11:3612129-3612232
Length
121 bp
Sequences
Splice sites
3' ss Seq
TCCAGCCGGTCTGGTCCCAGGTG
3' ss Score
6.96
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GTGAACTTCAATGAGCCCCTGTCCATGCTCCAGCGACTTACAGAGGACCTGGAGTACCACCACCTGCTGGACAAGGCGGTGAACTGCACCAGCTCGGTGGAGCAGATGTGCCTGGTAGCCGCCTTTTCTGTGTCCTCCTACTCCACCACGGTGCACCGCATCGCCAAGCCCTTCAACCCTATGCTCGGGGAGACCTTCGAGCTGGACCGTATGGAGGACATGGGCCTGCGTTCCCTCTGTGAGCAG
Seq A exon
GTGAGCCACCACCCCCCGTCTGCTGCCCACCACGTGTTCTCTAAGCATGGCTGGAGCCTCTGGCAAGAAATCACCATCGCCAGCAAGTTCCGAGGGAAATACATCTCTATCATGCCACTCG
Seq C2 exon
GTGCCATCCACCTAGAATTCCAGGCCAGTGGCAATCACTACGTGTGGAGGAAGAGCACCTCCACCGTGCACAACATCATCGTGGGCAAGCTCTGGATTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020435_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(21.5=100)
A:
PF0123713=Oxysterol_BP=FE(10.6=100)
C2:
PF0123713=Oxysterol_BP=FE(9.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCATGCTCCAGCGACTTAC
R:
GCCACTGGCCTGGAATTCTAG
Band lengths:
258-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: