GgaEX1041372 @ galGal3
Exon Skipping
Gene
ENSGALG00000007758 | F1NRB3_CHICK
Description
NA
Coordinates
chr15:11039416-11041710:-
Coord C1 exon
chr15:11041465-11041710
Coord A exon
chr15:11039694-11039814
Coord C2 exon
chr15:11039416-11039519
Length
121 bp
Sequences
Splice sites
3' ss Seq
CTGTCCTTTCTCCCTCCCAGGTG
3' ss Score
12.77
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
Exon sequences
Seq C1 exon
GTGAACTTCAATGAGCCGCTCTCCATGCTGCAGCGGCTGACGGAGGACCTGGAGTACCACGAGCTGCTGGACAAAGCAGTCAAGTGTGAGAGCTCCACAGAGCAGATGTGTTTCGTGGCAGCCTTTTCGGTGTCTTCCTACTCGACGACGGTGCACCGTACAGCGAAGCCGTTCAACCCGCTGCTGGGGGAAACCTATGAGCTCGACAGGCTGGAGGAGCTGGGCTTCCGTTCCCTGTGTGAGCAG
Seq A exon
GTGAGCCACCACCCCCCAGCAGCTGCCCACCACGTCTTCTCCAAGCGAGGCTGGACGCTGTGGCAGGAGATCACCATCGCCAGCAAGTTCAGGGGCAAATACCTCTCCATCATGCCTCTGG
Seq C2 exon
GTGCCATCCACCTCGAGTTTCACTCCAGTGGGAATCACTATGTCTGGAGGAAAGTCACCTCCACCGTTCACAACATCATCGTGGGCAAGCTTTGGATCGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007758-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(21.4=100)
A:
PF0123713=Oxysterol_BP=FE(10.6=100)
C2:
PF0123713=Oxysterol_BP=FE(9.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCAAGTGTGAGAGCTCC
R:
ATGTTGTGAACGGTGGAGGTG
Band lengths:
247-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]