HsaEX0044859 @ hg19
Exon Skipping
Gene
ENSG00000184792 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:8504]
Coordinates
chr22:31286715-31289553:+
Coord C1 exon
chr22:31286715-31286960
Coord A exon
chr22:31289109-31289229
Coord C2 exon
chr22:31289450-31289553
Length
121 bp
Sequences
Splice sites
3' ss Seq
TCCTATGGGTCTGGTCTCAGGTG
3' ss Score
7.76
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
GTGAACTTCAATGAGCCCCTGTCCATGCTCCAGCGGCTGACAGAGGACCTGGAGTACCACCACCTGCTGGACAAGGCAGTGCACTGCACCAGCTCAGTGGAGCAGATGTGCCTGGTGGCCGCCTTCTCTGTGTCCTCCTACTCCACCACAGTGCACCGCATCGCCAAGCCCTTCAACCCCATGCTGGGGGAGACCTTCGAGCTGGACCGCCTCGACGACATGGGCCTGCGCTCCCTCTGTGAGCAG
Seq A exon
GTGAGCCACCACCCCCCCTCAGCTGCGCACTACGTGTTCTCCAAGCATGGCTGGAGCCTCTGGCAGGAGATCACCATCTCCAGCAAGTTCCGGGGAAAATACATCTCCATCATGCCGCTAG
Seq C2 exon
GTGCCATCCACTTAGAATTCCAGGCCAGTGGGAATCACTACGTGTGGAGGAAGAGCACCTCAACTGTTCACAACATCATCGTGGGCAAGCTCTGGATCGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184792_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(21.2=100)
A:
PF0123713=Oxysterol_BP=FE(10.5=100)
C2:
PF0123713=Oxysterol_BP=PU(48.6=97.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGACCTGGAGTACCACC
R:
TGATTCCCACTGGCCTGGAAT
Band lengths:
243-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)