RnoEX6043066 @ rn6
Exon Skipping
Gene
ENSRNOG00000019645 | Osbp2
Description
oxysterol binding protein 2 [Source:RGD Symbol;Acc:1310505]
Coordinates
chr14:83951918-83953713:-
Coord C1 exon
chr14:83953468-83953713
Coord A exon
chr14:83952237-83952357
Coord C2 exon
chr14:83951918-83952021
Length
121 bp
Sequences
Splice sites
3' ss Seq
CTAGCTTGGTCTGGTCCCAGGTG
3' ss Score
5.44
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
GTGAACTTCAATGAGCCCCTGTCCATGCTCCAGCGACTTACAGAGGACCTCGAGTACCACCACCTGCTGGACAAGGCGGTGAACTGCACCAGCTCTGTGGAGCAGATGTGCCTGGTGGCTGCCTTCTCGGTGTCCTCCTACTCCACCACCGTGCACCGCATCGCCAAGCCCTTCAACCCGATGCTGGGGGAGACCTTCGAGTTGGATCGCCTGGAGGACATGGGCCTGCGTTCTCTCTGCGAGCAG
Seq A exon
GTGAGCCATCACCCCCCGTCTGCTGCCCACCACGTGTTCTCTAAGCATGGCTGGAGCCTCTGGCAGGAGATCACCATCGCCAGCAAGTTCCGGGGGAAATACATCTCCATCATGCCACTTG
Seq C2 exon
GTGCCATCCACCTCGAATTCCAGGCCAGTGGCAATCACTACGTGTGGAGGAAGAGTACCTCCACTGTGCACAACATCATCGTGGGCAAGCTCTGGATTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019645-'45-34,'45-32,48-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(21.5=100)
A:
PF0123713=Oxysterol_BP=FE(10.6=100)
C2:
PF0123713=Oxysterol_BP=FE(9.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCATGCTCCAGCGACTTAC
R:
CTGGAATTCGAGGTGGATGGC
Band lengths:
249-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]