BtaEX0025533 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011336 | OTOGL
Description
otogelin-like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr5:9906713-9912367:+
Coord C1 exon
chr5:9906713-9906792
Coord A exon
chr5:9907474-9907515
Coord C2 exon
chr5:9912267-9912367
Length
42 bp
Sequences
Splice sites
3' ss Seq
GTATCTTTGTTTCTTTGTAGGCA
3' ss Score
10.08
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GATTGAAGGATGCTTTCCCTATTGCCCTAAACATATGATCCTTGATGAAGTCACTCTTAAATGTGTTTATCCAGAAGACT
Seq A exon
GCATACCTCTGATTCCCACAGAACCAGCATTAATTTCACCAG
Seq C2 exon
GTCCAGAAATGATTACTCCATCAGACTTCACTGCAATTGACATGCTAACAACAACGACAGGTTTGGAATGTGAGGTATGACTGCGTAATATCTTCAGCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011336-'39-37,'39-36,40-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0182612=TIL=FE(48.2=100)
A:
PF0182612=TIL=PD(0.1=0.0)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGCTTTCCCTATTGCCCT
R:
CCTCACATTCCAAACCTGTCGT
Band lengths:
148-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development