MmuEX0021168 @ mm9
Exon Skipping
Gene
ENSMUSG00000091455 | Gm6924
Description
otogelin-like [Source:MGI Symbol;Acc:MGI:3647600]
Coordinates
chr10:107231198-107235857:-
Coord C1 exon
chr10:107235778-107235857
Coord A exon
chr10:107235378-107235416
Coord C2 exon
chr10:107231198-107231244
Length
39 bp
Sequences
Splice sites
3' ss Seq
GCATCTCTATTTATTTGTAGGCA
3' ss Score
6.87
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGTTGAAGGATGCTTGCCATATTGCCCCAAGAATATGATCCTGGATGAGACGACTCTTAAATGTGTTCACCCAGAAGACT
Seq A exon
GCATACCACTGTTTCCAACAGAACCAGCATTGCCACCAG
Seq C2 exon
ACATTACCCCATCAGACATGACACCGACCCCAGGTTTGGAATGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091455_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.143 C2=0.375
Domain overlap (PFAM):
C1:
PF0182612=TIL=FE(49.1=100)
A:
PF0182612=TIL=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTTGCCATATTGCCCCAA
R:
CATTCCAAACCTGGGGTCGG
Band lengths:
114-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: