RnoEX6031472 @ rn6
Exon Skipping
Gene
ENSRNOG00000030316 | Otogl
Description
otogelin-like [Source:RGD Symbol;Acc:1589018]
Coordinates
chr7:51900282-51904547:+
Coord C1 exon
chr7:51900282-51900361
Coord A exon
chr7:51900797-51900838
Coord C2 exon
chr7:51904504-51904547
Length
42 bp
Sequences
Splice sites
3' ss Seq
GCATCTCTATTTATTTGCAGGCA
3' ss Score
7.81
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGTTGAAGGATGTTTACCATATTGCCCCAAGCATATGATCCTGGATGAGGTGACTCTTAAATGTGTTTATCCAGAAGACT
Seq A exon
GCATACCACTGACTCCAACAGAACCAGCGTTAGTGCCACCAG
Seq C2 exon
CTACTCCGTCAGACATGACACCGACCCCAGGTTTGGAATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030316-'42-46,'42-44,43-46=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.267 C2=0.267
Domain overlap (PFAM):
C1:
PF0182612=TIL=FE(49.1=100)
A:
PF0182612=TIL=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGAAGGATGTTTACCATATTGCC
R:
CTCACATTCCAAACCTGGGGT
Band lengths:
124-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]