GgaEX7000387 @ galGal4
Exon Skipping
Gene
ENSGALG00000010342 | OTOGL
Description
otogelin-like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr1:39753749-39755455:+
Coord C1 exon
chr1:39753749-39753795
Coord A exon
chr1:39754570-39755156
Coord C2 exon
chr1:39755303-39755455
Length
587 bp
Sequences
Splice sites
3' ss Seq
AATGTGCCTTTTCCTTTTAGGCA
3' ss Score
10.86
5' ss Seq
CTTCTAAGC
5' ss Score
-3.94
Exon sequences
Seq C1 exon
AATACCCTTCTTTAGAAGAGCCTTCTGGGACATAGGCTCAATTTCCA
Seq A exon
GCATACCTGTGAAACCTATGGGATCAGCAACCGGAACAAAACCTTCATTGTTAATCTCTCACCCGGTTGCTACCACAGAGAGATTTCCTACGACACCTCCTATACATGTAACTTCATGGACTGAATCATCTGGTACTGATATGACAGTCAAAATTACCATGAAGACAAACACAACTTTAGCAAGAATGAATATTTCAGCGCAGTCCGTTACAGACTTGTACTCACTGGAAGATGCCACCTATTCAGCATATTCACTTCCAAGTATAGTGGAAACTTCTGATGTACCTCACAGCACTTCAAGTCCTTCTGTCCTTTTCAAACTCATCTCTTCAACAGATTTTCCAGCTGCTTTTCAAGCCTCAGCCATCACACCGTATACTGTCAATTCTAATGCATCTACAACTTTACCCATTCCAATAGCAACTTCAACAACCTTACTCAGTAGAATTCCTCTTCCAACACATTCTATATTATTAACACCCAGTTCCTTTGTTGTAGTTCCATTTCCACTTGAAGTATCCACCTCTCAGCAAGGAACTCTTCCCTCTACCTCAACACTTGAACCTCCAAACCATCTTTTGTCACTT
Seq C2 exon
CTGATACTAAGTATACCTACCTCTTCTATATCTCCTTTGTCTGTTAGAACTATATCTAGTGTTGGTCAACCTATAGGTCATCCAACACCTATTTCTCCGTTGACTTCAATTGCTTATCAAATTTCTAAAGCAACTAGATTTGCTGGCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010342-'37-38,'37-37,38-38=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGCCTTCTGGGACATAGG
R:
CTCAAAGCCAGCAAATCTAGTTG
Band lengths:
186-773
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]