HsaEX6068035 @ hg38
Exon Skipping
Gene
ENSG00000165899 | OTOGL
Description
otogelin like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr12:80328665-80333078:+
Coord C1 exon
chr12:80328665-80328744
Coord A exon
chr12:80329051-80329119
Coord C2 exon
chr12:80333005-80333078
Length
69 bp
Sequences
Splice sites
3' ss Seq
GCACCTTTGTTTCTTTGTAGGTA
3' ss Score
10.49
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
GGTTGAAGGATGCTTGCCCTACTGCCCTAAAAATATGATCCTTGATGAGGTCACCCTCAAGTGTGTTTATCCACGAGACT
Seq A exon
GTATACCTGTGATTCCCACAGAACCAACATTAATGCCACCAGCTAAGCCAACTGTGCCCATGTTTACAG
Seq C2 exon
TTTGGGAAATGATTACTCCATCAGACATCACTGTGTTTGATATGCTAACACCAACTACAGGCTTGGAATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899-'44-49,'44-48,46-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=FE(48.2=100)
A:
PF0182612=TIL=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGAAGGATGCTTGCCCTA
R:
ACATTCCAAGCCTGTAGTTGGTG
Band lengths:
151-220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains