BtaEX0025608 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014927 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr22:11728296-11734445:+
Coord C1 exon
chr22:11728296-11728405
Coord A exon
chr22:11731134-11731235
Coord C2 exon
chr22:11734312-11734445
Length
102 bp
Sequences
Splice sites
3' ss Seq
CATCTCTCTGTTCTGTCCAGGTT
3' ss Score
9.01
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ACTTTGGAGTTAGTGCTTTTTTAGCAACTGGTGGTGACATTACTCGGAATAAAGTGAGAAAAACCTTTGTTGGAACACCTTGCTGGATGGCGCCTGAAGTTATGGAACAG
Seq A exon
GTTCGTGGTTATGATTTTAAAGCTGACATCTGGAGTTTTGGGATCACAGCCATTGAACTGGCCACGGGGGCAGCTCCTTACCATAAGTACCCACCGATGAAG
Seq C2 exon
GTTTTAATGCTGACACTGCAGAATGATCCTCCTTCTTTGGAAACTGGTGTTCAAGATAAAGAAATGCTGAAAAAATATGGAAAATCATTTAGAAAAATGATTTCATTGTGCCTTCAAAAAGATCCAGAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014927_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.1=100)
A:
PF0006920=Pkinase=FE(12.0=100)
C2:
PF0006920=Pkinase=FE(16.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAACTGGTGGTGACATTACT
R:
TTTCTGGATCTTTTTGAAGGCACA
Band lengths:
218-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development