MmuEX6069726 @ mm9
Exon Skipping
Gene
ENSMUSG00000036737 | Oxsr1
Description
oxidative-stress responsive 1 [Source:MGI Symbol;Acc:MGI:1917378]
Coordinates
chr9:119173868-119177907:-
Coord C1 exon
chr9:119177798-119177907
Coord A exon
chr9:119176261-119176362
Coord C2 exon
chr9:119173868-119174001
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTCCCCCCAATCCTTTTCAGGTT
3' ss Score
10.52
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATTTCGGCGTCAGTGCTTTTTTAGCCACTGGTGGTGACATTACCAGAAATAAAGTGAGAAAAACGTTTGTTGGCACCCCGTGCTGGATGGCACCCGAAGTTATGGAGCAG
Seq A exon
GTTCGAGGTTATGATTTTAAAGCTGATATTTGGAGTTTTGGAATCACTGCGATTGAACTGGCCACAGGGGCAGCTCCTTATCATAAATATCCACCAATGAAG
Seq C2 exon
GTTTTAATGCTGACGCTCCAGAATGATCCTCCTTCTTTGGAAACTGGTGTTCAAGATAAAGAAATGCTGAAGAAATATGGAAAATCATTTAGAAAAATGATTTCATTGTGCCTTCAAAAGGATCCAGAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036737-'12-13,'12-11,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.161
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.1=100)
A:
PF0006920=Pkinase=FE(12.0=100)
C2:
PF0006920=Pkinase=FE(16.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCGGCGTCAGTGCTTTTT
R:
CCTTTTGAAGGCACAATGAAATCA
Band lengths:
231-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: