DreEX6094686 @ danRer10
Exon Skipping
Gene
ENSDARG00000027500 | oxsr1b
Description
oxidative stress responsive 1b [Source:ZFIN;Acc:ZDB-GENE-040426-723]
Coordinates
chr24:19938409-19942198:-
Coord C1 exon
chr24:19942089-19942198
Coord A exon
chr24:19938653-19938754
Coord C2 exon
chr24:19938409-19938542
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATGTGAGTGTTTATGTGCAGGTC
3' ss Score
5.99
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATTTCGGTGTAAGTGCCTTCTTAGCCACCGGTGGTGACATGACTCGAAATAAAGTGCGCAAGACGTTTGTGGGGACGCCATGTTGGATGGCTCCAGAGGTGATGGAGCAG
Seq A exon
GTCAAAGGTTACGACTTCAAAGCAGACATCTGGAGTTTTGGGATCACAGCCATTGAACTGGCCACAGGCGCAGCTCCGTACCACAAATACCCTCCGATGAAG
Seq C2 exon
GTGTTGATGTTGACTCTCCAGAATGATCCGCCTTGCCTCGAGACTGGCATCACAGACAAAGAGATGGTGAAGAAATATGGAAAGTCTTTGAGGAAGATGATCTCGCAGTGTTTGCAGAAAGAGCCGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027500-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.244
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.1=100)
A:
PF0006920=Pkinase=FE(12.0=100)
C2:
PF0006920=Pkinase=FE(16.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGGTGTAAGTGCCTTCTTAGC
R:
CTTTTCTCCGGCTCTTTCTGCA
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]