RnoEX0062786 @ rn6
Exon Skipping
Gene
ENSRNOG00000013136 | Oxsr1
Description
oxidative-stress responsive 1 [Source:RGD Symbol;Acc:1310466]
Coordinates
chr8:127954558-127958958:-
Coord C1 exon
chr8:127958849-127958958
Coord A exon
chr8:127956550-127956651
Coord C2 exon
chr8:127954558-127954691
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTCCCCCCAATCCCTTTCAGGTT
3' ss Score
10.66
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATTTCGGTGTTAGTGCTTTTTTAGCCACTGGTGGTGACATTACCAGAAATAAAGTAAGAAAGACGTTTGTTGGCACCCCGTGCTGGATGGCACCTGAAGTTATGGAGCAG
Seq A exon
GTTCGAGGTTATGATTTTAAAGCTGATATCTGGAGTTTTGGAATCACAGCGATTGAACTAGCCACAGGGGCAGCTCCTTATCATAAATATCCTCCAATGAAG
Seq C2 exon
GTTTTAATGCTGACACTCCAGAACGATCCTCCTTCTTTGGATACTGGTGTTCAAGATAAAGAAATGCTGAAAAAATATGGAAAATCATTTAGAAAAATGATTTCATTGTGCCTTCAAAAGGATCCAGAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013136-'12-17,'12-16,13-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.1=100)
A:
PF0006920=Pkinase=FE(12.0=100)
C2:
PF0006920=Pkinase=FE(16.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGAAATAAAGTAAGAAAGACGTT
R:
CCTTTTGAAGGCACAATGAAATCA
Band lengths:
190-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]