GgaEX1041652 @ galGal3
Exon Skipping
Gene
ENSGALG00000005979 | OXSR1
Description
NA
Coordinates
chr2:4820314-4826894:+
Coord C1 exon
chr2:4820314-4820423
Coord A exon
chr2:4823763-4823864
Coord C2 exon
chr2:4826761-4826894
Length
102 bp
Sequences
Splice sites
3' ss Seq
CGTTCTCTAATATTTTTCAGGTC
3' ss Score
10.96
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACTTTGGCGTTAGTGCTTTTTTGGCCACTGGTGGTGACATTACCAGAAATAAAGTCAGGAAAACATTTGTAGGCACACCTTGCTGGATGGCACCAGAAGTTATGGAACAG
Seq A exon
GTCAGAGGATACGATTTCAAGGCAGACATCTGGAGCTTTGGGATCACTGCTATCGAACTGGCTACAGGGGCAGCTCCTTATCATAAATACCCCCCGATGAAG
Seq C2 exon
GTTTTAATGCTGACACTACAAAATGATCCCCCGTCTTTGGAAACCGGTGTGCAAGATAAGGAGATGCTGAAGAAGTATGGGAAGTCTTTTAGGAAGATGATTTCATCGTGCCTACAAAAAGACCCTGAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005979-'12-14,'12-10,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.311
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.1=100)
A:
PF0006920=Pkinase=FE(12.0=100)
C2:
PF0006920=Pkinase=FE(16.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTGGCGTTAGTGCTTTTT
R:
TTTTTCAGGGTCTTTTTGTAGGCAC
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]