BtaEX0026374 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000445 | PDE6C
Description
phosphodiesterase 6C, cGMP-specific, cone, alpha prime [Source:HGNC Symbol;Acc:HGNC:8787]
Coordinates
chr26:14987041-14988171:+
Coord C1 exon
chr26:14987041-14987187
Coord A exon
chr26:14987432-14987539
Coord C2 exon
chr26:14988062-14988171
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTTGTCTTCTTCGGCGGCAGGTT
3' ss Score
7
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
AAGGAGGACCTGCCAGACCCACGGACTGCAGACCTGTATGAATTCCGCTTCAGCGACTTGCCCATCACAGAGCATGAACTGATTAAGTGTGGACTTCGGCTGTTTTTTGAAATAAACGTGGTGGAGAAATTCAAAGTACCTGTAGAG
Seq A exon
GTTCTCACCAGATGGATGTACACGGTGAGGAAGGGGTACCGGGCCGTCACATACCACAACTGGCGACACGGGTTTAACGTGGGGCAGACCATGTTCACTTTGCTGATG
Seq C2 exon
ACAGGAAGACTGAAGAAATACTACACAGACCTTGAAGCCTTTGCCATGCTTGCTGCTGCCTTCTGCCACGACATTGACCACAGAGGCACCAATAATTTGTATCAGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000445-'18-20,'18-19,20-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0023314=PDEase_I=PU(7.2=50.0)
C2:
PF0023314=PDEase_I=FE(14.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACCTGCCAGACCCAC
R:
ACAAATTATTGGTGCCTCTGTGGT
Band lengths:
244-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development