RnoEX0064389 @ rn6
Exon Skipping
Gene
ENSRNOG00000016593 | Pde6c
Description
phosphodiesterase 6C [Source:RGD Symbol;Acc:1309844]
Coordinates
chr1:256853575-256854519:+
Coord C1 exon
chr1:256853575-256853721
Coord A exon
chr1:256853954-256854061
Coord C2 exon
chr1:256854410-256854519
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTGTTGCCTTTGGGTAACAGGTT
3' ss Score
5.99
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
AAGGAGGAGCTGCCCGACCCAAGAGCAGCAGACCTGTACGAGTTCCGTTTCAGCGACTTCCCCGTTACGGAGCACGAGTTGGTTAAATGCGGGCTGCGGCTGTTTTTGGAGATAAATGTGGTGGAGAAATTCAAAGTACCGGTCGAG
Seq A exon
GTTCTTACACGGTGGATGTACACAGTTCGGAAAGGGTACCGCCCTGTCACCTACCACAACTGGCGACACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG
Seq C2 exon
ACTGGGAGACTAAAGAAATACTACACAGACCTCGAAGCTTTTGCCATGCTTGCTGCTGCCTTCTGCCATGACATTGACCACAGAGGAACCAATAACTTGTACCAAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016593-'13-13,'13-12,14-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0023314=PDEase_I=PU(7.2=50.0)
C2:
PF0023314=PDEase_I=FE(14.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGGAGCTGCCCGAC
R:
AGTTATTGGTTCCTCTGTGGTCA
Band lengths:
244-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]