HsaEX6089538 @ hg38
Exon Skipping
Gene
ENSG00000095464 | PDE6C
Description
phosphodiesterase 6C [Source:HGNC Symbol;Acc:HGNC:8787]
Coordinates
chr10:93640070-93641029:+
Coord C1 exon
chr10:93640070-93640216
Coord A exon
chr10:93640450-93640557
Coord C2 exon
chr10:93640920-93641029
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATGGTGTCATCTTCTTTTAGGTT
3' ss Score
10.57
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
AAAGAGGACTTGCCAGACCCACGCTCAGCAGAACTGTACGAATTCCGCTTCAGTGACTTCCCCCTTACAGAGCACGGATTGATTAAATGTGGAATACGACTGTTTTTTGAAATAAATGTGGTGGAGAAATTCAAAGTACCTGTAGAG
Seq A exon
GTTCTTACCAGATGGATGTACACTGTGAGGAAAGGGTACCGAGCTGTCACTTACCACAATTGGCGGCATGGGTTCAACGTGGGGCAGACCATGTTTACTTTGCTGATG
Seq C2 exon
ACAGGAAGATTAAAGAAGTACTACACAGATCTCGAAGCCTTTGCCATGCTTGCTGCTGCTTTCTGCCATGATATTGACCACAGAGGCACCAATAATTTGTACCAGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095464-'24-16,'24-15,25-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0023314=PDEase_I=PU(7.2=50.0)
C2:
PF0023314=PDEase_I=FE(14.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAGGACTTGCCAGACCCA
R:
TTATTGGTGCCTCTGTGGTCA
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains