DreEX6067656 @ danRer10
Exon Skipping
Gene
ENSDARG00000100397 | pde6c
Description
phosphodiesterase 6C, cGMP-specific, cone, alpha prime [Source:ZFIN;Acc:ZDB-GENE-040426-1664]
Coordinates
chr12:5109713-5112281:+
Coord C1 exon
chr12:5109713-5109859
Coord A exon
chr12:5111983-5112090
Coord C2 exon
chr12:5112172-5112281
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATGCATGACTCTTACACCAGGTC
3' ss Score
4.74
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AGAGCCAACATTCCAGAGGCCAAAGATGTCGATCTGCTAGAATTTAGTTTCAGTGACTTCCCTCTGACTGAAACCGATCTCATCAAGTGCGGCATTCGCTGCTTCTTTGAACTGGGAGTGGTGGAGAAGTTCAAGGTGCCAGCAGAG
Seq A exon
GTCCTGACCAGATGGATGTACACGGTGCGTAAGGGCTACAGAGACATCACCTACCATAACTGGAGGCATGGCTTCAACGTGGGCCAGACCATGTTCTGTCTTCTGCAG
Seq C2 exon
ACCGGAAAGCTGAGAAGATACTACACAGATCTTGATGCCTTCGCGATGGTAGCGGCTGCATTCTGTCATGATATTGACCACAGGGGTACCAACAATCTCTACCAGACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100397-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0023314=PDEase_I=PU(7.2=50.0)
C2:
PF0023314=PDEase_I=FE(14.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAACATTCCAGAGGCCAAA
R:
AGATTGTTGGTACCCCTGTGG
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]