GgaEX6040509 @ galGal4
Exon Skipping
Gene
ENSGALG00000006626 | PDE6C
Description
cone cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha' [Source:RefSeq peptide;Acc:NP_990317]
Coordinates
chr6:19914482-19915267:-
Coord C1 exon
chr6:19915121-19915267
Coord A exon
chr6:19914681-19914788
Coord C2 exon
chr6:19914482-19914591
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATCACTTTTATTCATACTAGGTC
3' ss Score
8.18
5' ss Seq
ATGGTAATG
5' ss Score
5.46
Exon sequences
Seq C1 exon
AAAGAAGAATTACCTGATCCCAAAGATCTAGAACTATATGAATTCCGCTTCAGTGACTTTCCCGTTACAGAACATGGCTTGATAACTTGTGGAATACGACTGTTCTTTGAGATAAACGTTGTTGAAAAATTCAAAGTCCCAGCAGAG
Seq A exon
GTCCTTACAAGATGGATGTACACAGTCAGGAAGGGTTATCGAGATATCACTTACCACAACTGGCGACATGGATTCAACGTGGGACAAACAATGTTTACTTTGCTGATG
Seq C2 exon
ACAGGTAGAATAAAGAAATACTACACTGATCTAGAAGCCTTTGCCATGGTTGCTGCTGCTTTCTGCCATGACATTGATCACAGAGGGACCAATAACTTGTATCAAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006626-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0023314=PDEase_I=PU(7.2=50.0)
C2:
PF0023314=PDEase_I=FE(14.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAATTACCTGATCCCAAAGA
R:
ACAAGTTATTGGTCCCTCTGTGA
Band lengths:
245-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]