BtaEX0026440 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017832 | PDK3
Description
Bos taurus pyruvate dehydrogenase kinase, isozyme 3 (PDK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101934]
Coordinates
chrX:125858025-125868546:-
Coord C1 exon
chrX:125868445-125868546
Coord A exon
chrX:125861166-125861276
Coord C2 exon
chrX:125858025-125858138
Length
111 bp
Sequences
Splice sites
3' ss Seq
AATGTTTTTGTATGTTACAGATA
3' ss Score
10.03
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
AACTCAATGAGAGCAACAGTTGAACTATATGAAGATAGAAAAGAGGGCTACCCAGCTGTTAAAACCCTGGTTACTCTGGGTAAAGAAGACTTATCCATTAAG
Seq A exon
ATAAGTGACCTAGGTGGTGGGGTTCCACTCCGAAAAATAGATCGCCTTTTTAACTACATGTATTCAACTGCTCCGAGACCTAGCCTGGAGCCTACCCGAGCTGCCCCATTG
Seq C2 exon
GCTGGATTTGGTTATGGCTTGCCAATTTCTCGTCTGTATGCTAGATATTTTCAAGGAGATCTAAAGCTCTATTCTATGGAAGGCGTGGGTACTGATGCTGTCATTTATTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017832-'10-10,'10-8,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0251821=HATPase_c=FE(26.2=100)
A:
PF0251821=HATPase_c=FE(28.6=100)
C2:
PF0251821=HATPase_c=FE(29.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAATGAGAGCAACAGTTGAACT
R:
AAATAAATGACAGCATCAGTACCCAC
Band lengths:
210-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development