DreEX0054445 @ danRer10
Exon Skipping
Gene
ENSDARG00000014527 | pdk3a
Description
pyruvate dehydrogenase kinase, isozyme 3a [Source:ZFIN;Acc:ZDB-GENE-061220-3]
Coordinates
chr24:24801371-24803118:-
Coord C1 exon
chr24:24803017-24803118
Coord A exon
chr24:24802834-24802941
Coord C2 exon
chr24:24801371-24801484
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGTATTTTTTTTATTCATAGATC
3' ss Score
8.6
5' ss Seq
CTGGTAATG
5' ss Score
5.67
Exon sequences
Seq C1 exon
AATGCAATGCGAGCCACCAATGATCTTCACGAGGGCAGCAAAGAGGGTCTTCCTCTTATAAAAGCAAAAGTGACCCTGGGGATTGAGGATCTGTCCGTGAAG
Seq A exon
ATCAGTGACAGGGGAGGGGGCGTGGCATTACGGAAGATCGACAGGCTATTTAACTACACCTACTCGACTGCACCCACACCCAGTCTGGACTCCAAACGAGTGCCGCTG
Seq C2 exon
GCTGGGTTTGGCCATGGTTTGCCGATCTCAAGACTCTACGCCCGATACTTTCAAGGAGACCTGAAACTGTACTCGATGGAAGGTGTGGGGACTGATGCCGTCATCTATTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014527-'10-13,'10-12,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0251821=HATPase_c=FE(26.4=100)
A:
PF0251821=HATPase_c=FE(28.0=100)
C2:
PF0251821=HATPase_c=FE(29.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGCGAGCCACCAATGATC
R:
ATGACGGCATCAGTCCCCA
Band lengths:
202-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]