GgaEX1042840 @ galGal3
Exon Skipping
Gene
ENSGALG00000016323 | Q5ZLT2_CHICK
Description
NA
Coordinates
chr1:121543496-121548270:-
Coord C1 exon
chr1:121548169-121548270
Coord A exon
chr1:121547848-121547958
Coord C2 exon
chr1:121543496-121543609
Length
111 bp
Sequences
Splice sites
3' ss Seq
ACTAACTTTTCATTCCTTAGATA
3' ss Score
8.64
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
AATTCAATGAGAGCTACAGTGGAGTTGCACGAAGGTAAGAGAGAAGGATATCCATCGATCAAGACCTTAGTCACTCTGGGGAAAGAAGATCTGTCTATTAAG
Seq A exon
ATAAGTGATCAAGGTGGAGGTGTACCTTTAAGAAAAATAGACAGATTGTTTAACTACATGTACTCAACAGCACCCAGGCCTAGTTTGGAGCCCACAAGAGCTGTTCCTTTG
Seq C2 exon
GCTGGGTTTGGCTATGGCTTGCCAATTTCTCGTCTGTACGCTAGGTACTTCCAAGGTGACCTGAAACTCTACTCAATGGAAGGTGTTGGATCAGATGCTGTAATTTATTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016323-'13-17,'13-15,14-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0251821=HATPase_c=FE(26.2=100)
A:
PF0251821=HATPase_c=FE(28.6=100)
C2:
PF0251821=HATPase_c=FE(29.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATGAGAGCTACAGTGGAGT
R:
TCAAATAAATTACAGCATCTGATCCA
Band lengths:
211-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]