HsaEX0046395 @ hg19
Exon Skipping
Gene
ENSG00000067992 | PDK3
Description
pyruvate dehydrogenase kinase, isozyme 3 [Source:HGNC Symbol;Acc:8811]
Coordinates
chrX:24545691-24549887:+
Coord C1 exon
chrX:24545691-24545792
Coord A exon
chrX:24546193-24546303
Coord C2 exon
chrX:24549774-24549887
Length
111 bp
Sequences
Splice sites
3' ss Seq
TAACATTTTGAACATTGCAGATC
3' ss Score
6.96
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
AACTCAATGAGAGCGACAGTTGAACTCTATGAAGACAGAAAAGAGGGCTACCCTGCTGTTAAAACCCTCGTTACTTTGGGTAAAGAAGACTTATCCATTAAG
Seq A exon
ATCAGTGACCTAGGTGGTGGTGTCCCACTTCGAAAAATAGATCGTCTTTTTAACTACATGTATTCTACTGCTCCTAGACCCAGCCTGGAGCCTACCAGAGCTGCCCCTTTG
Seq C2 exon
GCTGGATTTGGTTATGGTTTGCCAATTTCCCGTCTGTATGCTAGATATTTTCAAGGAGATCTGAAACTGTATTCCATGGAAGGAGTGGGTACTGATGCTGTCATTTATTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067992_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0251821=HATPase_c=FE(26.2=100)
A:
PF0251821=HATPase_c=FE(28.6=100)
C2:
PF0251821=HATPase_c=FE(29.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATGAGAGCGACAGTTGAACT
R:
CAAATAAATGACAGCATCAGTACCCA
Band lengths:
210-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)