MmuEX6045153 @ mm10
Exon Skipping
Gene
ENSMUSG00000035232 | Pdk3
Description
pyruvate dehydrogenase kinase, isoenzyme 3 [Source:MGI Symbol;Acc:MGI:2384308]
Coordinates
chrX:93777309-93782247:-
Coord C1 exon
chrX:93782146-93782247
Coord A exon
chrX:93781467-93781577
Coord C2 exon
chrX:93777309-93777422
Length
111 bp
Sequences
Splice sites
3' ss Seq
TAACATGTTGTGCACTGCAGATA
3' ss Score
7.93
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
AACTCAATGAGGGCAACAGTTGAACTACATGAAGATAAAAAAGAAGGCTACCCAGCTGTTAAAACTCTCGTTACTCTGGGTAAAGAAGACTTGTCCATTAAG
Seq A exon
ATAAGTGACCTAGGTGGTGGAGTCCCACTTCGAAAAATAGACCGTCTTTTTAACTACATGTACTCAACTGCTCCTCGTCCCAGCCTGGAGCCTACAAGAGCGGCGCCCTTG
Seq C2 exon
GCTGGATTTGGTTATGGCTTGCCAATTTCTCGTCTGTATGCCAGATATTTTCAGGGAGATCTAAAACTGTATTCCATGGAAGGAGTGGGTACCGATGCAGTCATTTATTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035232-'16-16,'16-15,17-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0251821=HATPase_c=FE(26.2=100)
A:
PF0251821=HATPase_c=FE(28.6=100)
C2:
PF0251821=HATPase_c=FE(29.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCAATGAGGGCAACAGTTGA
R:
ATAAATGACTGCATCGGTACCCAC
Band lengths:
210-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types