BtaEX0026475 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016471 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr18:1932731-1934596:-
Coord C1 exon
chr18:1934475-1934596
Coord A exon
chr18:1933614-1933731
Coord C2 exon
chr18:1932731-1932880
Length
118 bp
Sequences
Splice sites
3' ss Seq
ATCCCTCTGTGTGTCTGTAGTGG
3' ss Score
7.83
5' ss Seq
CAAGTGAGG
5' ss Score
5.85
Exon sequences
Seq C1 exon
GTGTTCAGATCTATGACCGGACAAGTATTCTTCATGTCATGGTCAAAAAAGGTCAAGTCGCGGGCGTGGAGACAGATAAAGGACAGATCCAGTGCCAGTACTTTGTCAACTGTGCTGGTCAG
Seq A exon
TGGGCATACGAGCTGGGTCTGTGCAGCGAGGAGCCGGTTAGCATCCCGTTACACGCCTGCGAACACTTCTACCTTCTGACTCGCCCCTGGGAGACCCCGCTGCCGAGCAGCACGCCAA
Seq C2 exon
CTGTTGTAGATGCCGATGGAAGAATTTATATTCGGAACTGGCAGGGTGGCATCCTATCAGGGGGCTTTGAGAAAAACCCAAAACCAATTTTCACTGAGGGCAAGAACCAGCTGGAGATTCAGAATCTGCAGGAAGACTGGGATCATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016471-'18-8,'18-7,19-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.075 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(11.1=100)
A:
PF0126619=DAO=FE(10.9=100)
C2:
PF0126619=DAO=FE(13.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCAGATCTATGACCGGACA
R:
TGAATCTCCAGCTGGTTCTTGC
Band lengths:
243-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development