DreEX0006648 @ danRer10
Exon Skipping
Gene
ENSDARG00000103288 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr18:50957614-50958344:+
Coord C1 exon
chr18:50957614-50957735
Coord A exon
chr18:50957848-50957965
Coord C2 exon
chr18:50958195-50958344
Length
118 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTTTCAGTGG
3' ss Score
10.7
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTGTGCAGATCTTTGAACACACCAGCGTCACACACGTGCTGATGAAGAATGGTCACGTGGCCGCAGTGGAGACTGATCGCGGGTCAGTGGAGTGTGAATACTTTGTCAACTGTGCTGGACAG
Seq A exon
TGGGCGTATGAGCTGGGTCAGAGCAGTGAGGTGAAGGTGTCTGTTCCTCTGCATGGATGTGAGCACTTCTACCTGCTGACCAAACCTCTTTCTGAGCCGCTACCGTCCGACAGTCCAG
Seq C2 exon
TGGTGATCGACATGGACGGACGGATCTATGCGCGCTCTTGGCATGGGGGAATCCTGTCTGGAGGTTTCGAGAAGAACCCCAAACCCATCTTCACTGAGGGACGCAACCAGCTGGAGGTGCAGAACATGCAGGAGGACTGGGATCACTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103288-'9-9,'9-8,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.098
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(11.1=100)
A:
PF0126619=DAO=FE(10.9=100)
C2:
PF0126619=DAO=FE(13.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAACACACCAGCGTCACA
R:
ATCCCAGTCCTCCTGCATGTT
Band lengths:
254-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]