GgaEX6008919 @ galGal4
Exon Skipping
Gene
ENSGALG00000002690 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr11:1785689-1787722:-
Coord C1 exon
chr11:1787601-1787722
Coord A exon
chr11:1787115-1787232
Coord C2 exon
chr11:1785689-1785838
Length
118 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCTTCCCAATTTCAGTGG
3' ss Score
9.71
5' ss Seq
CGAGTAAGG
5' ss Score
6.93
Exon sequences
Seq C1 exon
GTGTCCAGATCCACGAGCGGACGAGCGTCAGTCATGTGTCAGTGCAGAAGGGTCGTGTGACCGGAGTTGAGACCGACAGAGGACACATCAAATGCCAGTACTTTGTCAACTGTGCTGGCCAG
Seq A exon
TGGGCCTACGAGTTGGGCCACTCCGGGGAGGAACCAGTCAACATCCCACTCCATGCCTGCGAGCACTTCTACCTCCTGACACATCCTTTGAAGGAACCTCTGGCAAGCAACGTCCCGA
Seq C2 exon
CTGTTGTGGACCCCGATGGCAGGATCTACATCCGCAACTGGCAGGGCGGAATCCTCTCGGGGGGCTTTGAGAAAAACCCCAAACCTCTTTTCACGGAGGGACGGAACCAGCTGGAGATCCATAACCTGCAGGAAGACTGGGATCACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002690-'5-7,'5-5,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(11.1=100)
A:
PF0126619=DAO=FE(10.9=100)
C2:
PF0126619=DAO=FE(13.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCAGTCATGTGTCAGTGCA
R:
AGTGATCCCAGTCTTCCTGCA
Band lengths:
244-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]