MmuEX0034311 @ mm9
Exon Skipping
Gene
ENSMUSG00000033624 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:MGI Symbol;Acc:MGI:2442188]
Coordinates
chr8:113638642-113640731:+
Coord C1 exon
chr8:113638642-113638763
Coord A exon
chr8:113639024-113639141
Coord C2 exon
chr8:113640582-113640731
Length
118 bp
Sequences
Splice sites
3' ss Seq
CCACAAACTGTCCATTGTAGTGG
3' ss Score
4.16
5' ss Seq
CAAGTGAGG
5' ss Score
5.85
Exon sequences
Seq C1 exon
GTGTTCAGATTTATGACCGGACAAGTGTTCTTCACGTACTGATCAAAAAAGGTCAAGTTACTGGTGTGGAGACAGACAAAGGACAGATCGAATGCCAGTATTTTGTCAACTGTGCCGGGCAG
Seq A exon
TGGGCATATGAGCTGGGTCTGTCCAACGAGGAGCCGCTTAGTATCCCGCTACACGCCTGTGAACACTTCTACCTTCTGACTCGTCCCTGGGACACCCCTCTGCAGAGCAACACACCAA
Seq C2 exon
CCATTGTGGATGCTGATGGAAGAATTTACATTAGGAACTGGCAGGGTGGCATCTTGTCTGGAGGCTTTGAGAAGAACCCCAAACCTATTTTCACTGAAGGCAAGAACCAGTTGGAAATTCAGAACCTTCGTGAAGACTGGGATCACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033624-'7-7,'7-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(11.1=100)
A:
PF0126619=DAO=FE(10.9=100)
C2:
PF0126619=DAO=FE(13.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCGGACAAGTGTTCTTCAC
R:
TCCCAGTCTTCACGAAGGTTCT
Band lengths:
251-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: