RnoEX0064639 @ rn6
Exon Skipping
Gene
ENSRNOG00000022593 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:RGD Symbol;Acc:1308307]
Coordinates
chr19:43128360-43129957:-
Coord C1 exon
chr19:43129836-43129957
Coord A exon
chr19:43129434-43129551
Coord C2 exon
chr19:43128360-43128509
Length
118 bp
Sequences
Splice sites
3' ss Seq
CCGCAAACTGCCTGCTGTAGTGG
3' ss Score
0.54
5' ss Seq
CAAGTGAGG
5' ss Score
5.85
Exon sequences
Seq C1 exon
GTGTTCAGATTTATGACCGGACAAGTGTTCTTCATGTACTGACCAAAAAAGGTCGAGTTACTGGTGTGGACACAGATAAAGGGCAGATCGAATGCCAGTATTTTGTCAACTGTGCTGGTCAG
Seq A exon
TGGGCGTATGAGCTGGGTTTGTCCAGCGAGGAGCCGGTTAGTATCCCGCTGCACGCCTGTGAGCACTTCTACCTTCTGACTCGTCCCTGCGACGCCCCTCTGCAGAGCAGCACACCAA
Seq C2 exon
CCGTTGTGGATGCGGACGGAAGAATTTACATTAGGAACTGGCAGGGTGGCGTCTTGTCTGGAGGCTTTGAGAAGAACCCAAAACCTATTTTCACTGAAGGCAAGAACCAGTTGGAAATTCAGAACCTTCGGGAAGATTGGGATCACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022593-'13-13,'13-12,14-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(11.1=100)
A:
PF0126619=DAO=FE(10.9=100)
C2:
PF0126619=DAO=FE(13.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCGGACAAGTGTTCTTCA
R:
TGATCCCAATCTTCCCGAAGGT
Band lengths:
254-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]