BtaEX0026487 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006529 | PDSS1
Description
Bos taurus prenyl (decaprenyl) diphosphate synthase, subunit 1 (PDSS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001100331]
Coordinates
chr13:18182707-18191850:-
Coord C1 exon
chr13:18191737-18191850
Coord A exon
chr13:18186426-18186506
Coord C2 exon
chr13:18182707-18183153
Length
81 bp
Sequences
Splice sites
3' ss Seq
TAGGTTTTCTTTCTGGTTAGTTC
3' ss Score
5.3
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTGATAGACGACGTCCTGGACTTCACCTCGTGTTCTGAACAGATGGGCAAACCGACTTCAGCTGACCTGAAGCTTGGGTTAGCCACTGGCCCCGTCTTATTTGCATGTCAGCAG
Seq A exon
TTCCCAGAAATGAATGCTATGATAATGAGACGGTTCGGTTCACCAGGAGACGTGGACAGAGCGCTACAGTACGTATTACAG
Seq C2 exon
AGTGATGGTGTGCAGCAGACAACCTACCTCGCCCAGCGGTACTGCCACAAAGCGGTGAGCGAGATCAGTAAACTTCGACCATCCCCAGAAAGAGACGCCCTCATACAGCTTTCAGAGATGGTGCTCACAAGAGACAAATGACACCTCTTTCTGGTATTTCTGGCAGCTATTTTACCAGATTGTGCCTCAAAAATTCTGTGGAATACACTTTGCTTCATGTGCAGATAACCAAAAAAATCATTTAAAAAGATCATTTCCTTATTAATGGGACTTTTTTTTTATTGGCAAAGTTTTTCAGAAAACTTTCTAAATGTATTTAAACCATCTGAATCTGTCATTCTAGTCCTATAAACTCTAATCGAGGTATCTTGATGGTTATATGTGGTATTGTTTACACAGTTATAGTAGCCACATGTAAAGCCATTACACAAATAAATAATCAATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006529_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034812=polyprenyl_synt=FE(14.1=100)
A:
PF0034812=polyprenyl_synt=FE(9.9=100)
C2:
PF0034812=polyprenyl_synt=PD(4.2=23.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGACTTCACCTCGTGTT
R:
TACTGATCTCGCTCACCGCTT
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development