GgaEX0010745 @ galGal4
Exon Skipping
Gene
ENSGALG00000007559 | PDSS1
Description
prenyl (decaprenyl) diphosphate synthase, subunit 1 [Source:HGNC Symbol;Acc:HGNC:17759]
Coordinates
chr2:15977931-15981564:-
Coord C1 exon
chr2:15981451-15981564
Coord A exon
chr2:15978824-15978904
Coord C2 exon
chr2:15977931-15978071
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACTTCTCGTTCTGTGCTTAGTTT
3' ss Score
8.57
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
CTAATAGATGATGTGTTGGATTTCACATCGTGTGCTGACCATCTTGGGAAACCGGCAGCAGCAGATCTCAAGCTTGGGTTAGCCACAGGCCCTGTCTTGTTTGCTTGTCGACAG
Seq A exon
TTTCCAGAAATGAATGCCATGATAATGAGACGATTCAGTAAGCCAGGAGATGTTGAACGTGCTCGGAAGTACGTGTTGCAG
Seq C2 exon
AGTGACGGTGTGCAGCAAACAACCTACCTCGCCCAGCGCTACTGCCACGAAGCGACGAGAGAGATCAGTAAACTGCGCCCATCCCCTGAAAGAGAAGCCCTCATTCAACTGACAGAAATGGTACTCATGCGAGACAAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007559_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.065
Domain overlap (PFAM):
C1:
PF0034812=polyprenyl_synt=FE(14.1=100)
A:
PF0034812=polyprenyl_synt=FE(9.9=100)
C2:
PF0034812=polyprenyl_synt=PD(4.2=23.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGTGTGCTGACCATCTTGG
R:
GGATGGGCGCAGTTTACTGAT
Band lengths:
172-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]