MmuEX0034333 @ mm10
Exon Skipping
Gene
ENSMUSG00000026784 | Pdss1
Description
prenyl (solanesyl) diphosphate synthase, subunit 1 [Source:MGI Symbol;Acc:MGI:1889278]
Coordinates
chr2:22929744-22940266:+
Coord C1 exon
chr2:22929744-22929857
Coord A exon
chr2:22935559-22935639
Coord C2 exon
chr2:22939823-22940266
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTCTTTATGGTTAGTTC
3' ss Score
7.22
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CTCATAGATGATGTATTGGATTTCACCTCATGTTCTGACCAGATGGGCAAGCCAACATCTGCAGACCTGAAGCTAGGCATAGCCACTGGCCCTGTCTTGTTTGCTTGCCAGCAG
Seq A exon
TTCCCAGAAATGAATGCTATGATAATGAGACGGTTCAGTTTGCCAGGAGATGTGGACAGAGCACGACAGTATGTATTACAG
Seq C2 exon
AGTGATGGCGTGCAGCAAACAACCTACCTCGCCCAGCAGTACTGCCACAAAGCTGTGAGAGAGATCAGGAAGCTTAGACCATCTACAGAAAGGGACGCCCTCATTCAGCTTTCAGAAAGTGTGCTCACCAGAGATAAATGACAATTCCTCCTCTTCTTTCTGGCAGCTATTTTACCAGACTGTGCCTAATGATTTTGTGAAACACTATTTGCTTCATGTGCAGAAAACCAAAAATCATTTTAAGAAATAATTTCAACCTTATTGATGGGCAATTTTTATTGGCAAAGTTTTTCGGAAAACTTTTTAAATGTAATTAAACCAGTGTCATTATAGTCCTATAAATTCTAATCGAGGTATCCTGATGGTTATATGTGGTATTGTTTACACTGTTAATGCCCACATGTAAAGCCATTACACAAATAAATAATCAACGTTAAAATTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026784_MULTIEX2-3/4=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034812=polyprenyl_synt=FE(14.1=100)
A:
PF0034812=polyprenyl_synt=FE(14.4=100)
C2:
PF0034812=polyprenyl_synt=PD(4.2=23.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCAACATCTGCAGACCTG
R:
CTGAAAGCTGAATGAGGGCGT
Band lengths:
181-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types