DreEX6093843 @ danRer10
Exon Skipping
Gene
ENSDARG00000017910 | pdss1
Description
prenyl (decaprenyl) diphosphate synthase, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4430]
Coordinates
chr24:5985970-5987655:-
Coord C1 exon
chr24:5987542-5987655
Coord A exon
chr24:5987355-5987435
Coord C2 exon
chr24:5985970-5986455
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGATTGTGTCCTTACTGCAGTTT
3' ss Score
7.18
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTTGTGGATGATATTCTGGACTTCACCTCCAATGCCAACTGTCTGGGGAAGCCGTCGGCCGCTGACCTGAAGCTGGGTTTGGCCACGGGACCCGTTCTCTTTGCTTGCCAACAG
Seq A exon
TTTCCAGAGCTTCATTCCATGATCATGAGGCGCTTCAGCTCTGATGGAGATGTGGATCGAGCCTGGCAATATGTGCTGAAG
Seq C2 exon
AGTGACGGTGTTGAACAGACGAACTACCTCGCCCAACACTACTGCCAAGAGGCCATTCGTCAGATCAGCCGGCTGCGTCCGTCCAGTGAGAGAGACGCTCTTATTCGATTGACGGAGCTGGTGCTGCGCAGAGACAAATGAGCCCGGCAGAGCTCCGCCCTCAGGCAGCTACACCTCTACACACAGAGAACATTTACACCACACTGTAAGCTTTACCGTACTGTTACGGCAGAGGATGACTGTGAATGAACGACACACTCTGCCAAGACCACCAGAATTCCAGGTGTAGCACAGACAGAGGTGCTACTGTCACTCATGTGTGTGTGTTTATGTGGATCCGTTAGAGATGCTTTAACATCCGTCCACATTACAGAAGGCCAAACGTCTCGATTTCTTGTTGATGTGCTTTTGCGTAAAGTGCTCAGTAACAGCCAAGGCCTTAAATTTCACTATTTACTCCAATTAAATAAGGTATTTTTTAAAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017910-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034812=polyprenyl_synt=FE(14.2=100)
A:
PF0034812=polyprenyl_synt=FE(10.0=100)
C2:
PF0034812=polyprenyl_synt=PD(4.2=23.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACTTCACCTCCAATGCC
R:
GCTGATCTGACGAATGGCCTC
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]