BtaEX0026779 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015976 | PHF12
Description
PHD finger protein 12 [Source:HGNC Symbol;Acc:HGNC:20816]
Coordinates
chr19:20837311-20846281:-
Coord C1 exon
chr19:20846117-20846281
Coord A exon
chr19:20838780-20838878
Coord C2 exon
chr19:20837311-20837449
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCCCTATGTTTGCCTTGCAGTGC
3' ss Score
10.24
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CTGAACCAGAAGAACATGACGCTGAGCAATCGGTGCCAGGTGTTTGACCGCTTCCAGGACACCATTTCACAGCACGTCGTCAAAGTGGACTTCCTGAACCGAATCCACAAGAAGCACCCTCCCAACCGCCGCATGCTCCAGTCGGTCAAAAGAAGAAGCTTGAAG
Seq A exon
TGCAGAGAAGGGAAGTACAGGCCCGAGCTGTGTTCTACCCCCTCTTAGGGTTGGGAGGCGCTGTGAACATGTGCTATCGAACCCTCTACATCGGGACAG
Seq C2 exon
AATACCAAACATTATGAGCTGTTAAACTACAGTGAGCACGGGACAACGGTGGACAATGTGCTGTATTCATGTGACTTCTCTGAGAAGACCCCGCCAACCCCCCCAAGCAGTATTGTTGCCAAAGTGCAGAGTGTCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015976_MULTIEX1-6/8=C1-8
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=0.000 C2=0.170
Domain overlap (PFAM):
C1:
NO
A:
PF0049821=FHA=PU(7.7=14.7)
C2:
PF0049821=FHA=PD(47.7=66.0)
Main Skipping Isoform:
ENSBTAT00000021255fB5182
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTCCAGGACACCATTTCA
R:
AGCACATTGTCCACCGTTGTC
Band lengths:
179-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development