DreEX0055019 @ danRer10
Exon Skipping
Gene
ENSDARG00000075509 | phf12b
Description
PHD finger protein 12b [Source:ZFIN;Acc:ZDB-GENE-110628-2]
Coordinates
chr15:24623361-24625796:+
Coord C1 exon
chr15:24623361-24623519
Coord A exon
chr15:24623605-24623703
Coord C2 exon
chr15:24625714-24625796
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTGTCTTTTTGCAGCAC
3' ss Score
12.08
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
AAGTGGACATGAATAAGCTGGATGAGGAGTTGATCAGACTCATGGCTTGGCAGAGGATCCAGCAGCTGTTGTCTCCCAAATCACTTCAAGCCTCGAGTAAATGTGGGACTCCTCCAGCTGCCACTGCCTCTCTGTCCAAACCCTCCCTGCATGCAGACG
Seq A exon
CACAAAAAAGGGACGTACAAGCTCGAGCAGTACTATGTCCTTTAACAGGAAAGGGGGCAGCTATCAACATGTGCTATAGAACTCTGTACATAGGAACAG
Seq C2 exon
GTGCTGAAATGGATGTGTGCCTTACAAACTACGGTCATTGCAATTATGTTTCTGGGAAACATGCCTGCATCTTTTATGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075509_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0049821=FHA=PU(7.9=14.7)
C2:
PF0049821=FHA=FE(42.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCAGCAGCTGTTGTCTCC
R:
AGATGCAGGCATGTTTCCCAG
Band lengths:
176-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]