GgaEX1043341 @ galGal4
Exon Skipping
Gene
ENSGALG00000004029 | PHF12
Description
PHD finger protein 12 [Source:HGNC Symbol;Acc:HGNC:20816]
Coordinates
chr19:5884382-5886950:-
Coord C1 exon
chr19:5886807-5886950
Coord A exon
chr19:5884969-5885067
Coord C2 exon
chr19:5884382-5884464
Length
99 bp
Sequences
Splice sites
3' ss Seq
GCTTTCTCTTTATCTTGCAGCGC
3' ss Score
12.02
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AGATTGAGATAAATATGCTGGATGAGCAGCTGATCAAGTTTCTGGCCTTGCAGAGAATACATCAGCTCTTTCCTTCCAAAGCTCAGTCTCTAGCAAGCAGTGTCAGTGCCCATCAGCAATCTCCTGTGGCAAACCACATTGAAG
Seq A exon
CGCAAAGAAAGGAAGTGCAAGCCCGGGCAGTGTTCTACCCTCTGATGGGCTTGGGGGGTGCAGTCAATATGTGCTATCGAACCCTCTACATTGGGACAG
Seq C2 exon
GAGCCGATATGGATGTGTGCCTTACAAGCTATGGTCACTGTAACTACGTGTCCGGCAAACACGCCTGCATATTCTACGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004029_MULTIEX1-3/5=2-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0049821=FHA=PU(7.7=14.7)
C2:
PF0049821=FHA=FE(41.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGATCAAGTTTCTGGC
R:
GCCGGACACGTAGTTACAGTG
Band lengths:
175-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]