MmuEX1019896 @ mm10
Exon Skipping
Gene
ENSMUSG00000037791 | Phf12
Description
PHD finger protein 12 [Source:MGI Symbol;Acc:MGI:1924057]
Coordinates
chr11:78025885-78028309:+
Coord C1 exon
chr11:78025885-78026028
Coord A exon
chr11:78027320-78027418
Coord C2 exon
chr11:78028227-78028309
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCCCTATGTTTGTCTTGTAGTGC
3' ss Score
9.01
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AAATCGAGATAAATATGTTGGATGAGAAGCTGATCAAGTTTCTGGCCTTGCAGAGAGTACATCAGCTTTTCCCTTCCCGGGTCCAAGCTTCACCGGGCAATGTTGGGACACATCCGCTGGCTTCTGGAGGGCACCACCCAGAAG
Seq A exon
TGCAAAGAAAGGAGGTACAGGCCCGAGCTGTGTTCTGCCCCCTCTTAGGGTTGGGAGGAGCTGTGAACATGTGCTATCGAACCCTCTACATCGGGACAG
Seq C2 exon
GAGCTGACATGGATGTGTGCCTTACAAACTATGGTCACTGTAACTACGTGTCCGGGAAACATGCCTGCATATTCTACGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037791-'38-51,'38-48,46-51
Average complexity
S
Mappability confidence:
94%=100=83%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.249 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0049821=FHA=PU(7.7=14.7)
C2:
PF0049821=FHA=FE(41.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGCCTTGCAGAGAGTACA
R:
ATATGCAGGCATGTTTCCCGG
Band lengths:
176-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types