RnoEX0065293 @ rn6
Exon Skipping
Gene
ENSRNOG00000009566 | Phf12
Description
PHD finger protein 12 [Source:RGD Symbol;Acc:1305731]
Coordinates
chr10:64817608-64820075:-
Coord C1 exon
chr10:64819932-64820075
Coord A exon
chr10:64818566-64818664
Coord C2 exon
chr10:64817608-64817690
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCCCTGTGTTTGTCTTATAGTGC
3' ss Score
9.96
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AAATCGAGATAAATATGTTGGACGAGAAGCTGATCAAGTTTCTGGCCTTGCAGAGAATACATCAGCTTTTCCCTTCCCGGGGTCAAGCTTCACCGGGCAGTGTTGGGACACATCCGCTGTCTTCTGGAGGGCACCACACAGAAG
Seq A exon
TGCAAAGGAAGGAGGTACAAGCCCGAGCTGTGTTCTACCCCCTCTTAGGGTTGGGAGGAGCTGTGAACATGTGCTATCGAACCCTCTACATCGGGACAG
Seq C2 exon
GAGCTGACATGGATGTGTGCCTTACAAACTATGGTCACTGTAACTACGTGTCCGGGAAACATGCCTGCATATTCTACGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009566-'23-22,'23-20,25-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.442 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0049821=FHA=PU(7.7=14.7)
C2:
PF0049821=FHA=FE(41.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTTTCTGGCCTTGCAGA
R:
ATATGCAGGCATGTTTCCCGG
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]