BtaEX0027162 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018430 | PION
Description
Bos taurus pigeon homolog (Drosophila) (PION), mRNA. [Source:RefSeq mRNA;Acc:NM_001193061]
Coordinates
chr4:44133303-44136844:+
Coord C1 exon
chr4:44133303-44133398
Coord A exon
chr4:44136205-44136275
Coord C2 exon
chr4:44136750-44136844
Length
71 bp
Sequences
Splice sites
3' ss Seq
AGACTCTCTTTACCCTCTAGCTG
3' ss Score
7.21
5' ss Seq
CTTGTACGC
5' ss Score
1.9
Exon sequences
Seq C1 exon
ATGGTGTCTGAACTAAGAGAGCATCTTTTGAGACATCTACAGGGTGTAGAAAAGAGAAAAATTGAACAGATGGTTCTGGACTACGTTTCAAAACTG
Seq A exon
CTGGATCTCATTTGCCAAATACTGGAAGCCAGTTGGAGGAAACATAATCTTCATCCCTGGGCTCTCCACTT
Seq C2 exon
CAATAGACAGGCGAGTGCTGCTGAATTTGCGGTCTTTCACATCATGACCAGGATTTTGGAAGCTACTAACACTTTGTTTTTACCCCTGCCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018430-'32-28,'32-27,33-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149591=GSAP-16=PU(5.2=18.8)
A:
PF149591=GSAP-16=FE(20.0=100)
C2:
PF149591=GSAP-16=FE(27.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTTTTGAGACATCTACAGGGT
R:
CAGGAGGCAGGGGTAAAAACA
Band lengths:
171-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development