RnoEX0040232 @ rn6
Exon Skipping
Gene
ENSRNOG00000028801 | Gsap
Description
gamma-secretase activating protein [Source:RGD Symbol;Acc:1563271]
Coordinates
chr4:10427108-10436192:-
Coord C1 exon
chr4:10436097-10436192
Coord A exon
chr4:10433113-10433183
Coord C2 exon
chr4:10427108-10427227
Length
71 bp
Sequences
Splice sites
3' ss Seq
CAGATCTTCTTTCCCTCTAGCTG
3' ss Score
8.83
5' ss Seq
CCTGTACGC
5' ss Score
1.91
Exon sequences
Seq C1 exon
ATGGTGTCTGAGCTAAGAGACCATCTACTGAGACACCTGCAGGGTGTAGAAAAGAAGAAAATTGAACAGATGGTTCTGGACTACATTTCAAAACTG
Seq A exon
CTGGATCTCGTTTGGTGCTTGCTGGAAACCAGTTGGAGGAAACACAGTGTGCACCCCTGGGTTCTCCACCT
Seq C2 exon
GTTTCCACTCTCTGCACACAATCCTTGGGGTCCACTGTCTCCCTTTGTACAACCTTCTGCACTACATTGATAACGGCGTGCTGCTGCTCACCGAGACTGTGGTCACGAGGCTTATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028801_MULTIEX1-3/5=1-5
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149591=GSAP-16=PU(5.2=18.8)
A:
PF149591=GSAP-16=FE(20.0=100)
C2:
PF149591=GSAP-16=FE(34.8=100),PF056127=DUF781=PU(22.7=48.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACTGAGACACCTGCAGGG
R:
GACCACAGTCTCGGTGAGCAG
Band lengths:
177-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]