GgaEX6000469 @ galGal3
Exon Skipping
Gene
ENSGALG00000008312 | PION
Description
NA
Coordinates
chr1:13678660-13683454:+
Coord C1 exon
chr1:13678660-13678755
Coord A exon
chr1:13682768-13682838
Coord C2 exon
chr1:13683360-13683454
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTGTTTGTTTTAGCTG
3' ss Score
10.54
5' ss Seq
CTTGTAAGC
5' ss Score
4.33
Exon sequences
Seq C1 exon
ATGGTTGCTCAGCTAAAGGATCATCTTATGAGACATCTGCAGTATGTAGGAAAAAAGAAGATTGACCAAATAGTGCTGGATTATGTTGCAAACCTG
Seq A exon
CTGAATCTGGTACATCGAATAATGAAAGAGGTTTGGAAGATACATCAGCTGCATTCCTGCATCTTCTGCTT
Seq C2 exon
TGATGAGAGAGGAAGTGAAGCAGAGTTCAGAGTGTTTCACATCATGAGTCGAATTCTGGAAGCTGCAAATGGCATGTGTATGCCTTTACCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312-'26-34,'26-33,30-34=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF042697=DUF440=PD(16.5=46.9),PF149591=GSAP-16=PU(5.2=18.8)
A:
PF149591=GSAP-16=FE(20.0=100)
C2:
PF149591=GSAP-16=FE(27.8=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTGCTCAGCTAAAGGATCA
R:
GCCATTTGCAGCTTCCAGAAT
Band lengths:
168-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]