MmuEX0035223 @ mm10
Exon Skipping
Gene
ENSMUSG00000039934 | Gsap
Description
gamma-secretase activating protein [Source:MGI Symbol;Acc:MGI:2442259]
Coordinates
chr5:21278045-21287796:+
Coord C1 exon
chr5:21278045-21278140
Coord A exon
chr5:21280996-21281066
Coord C2 exon
chr5:21287553-21287796
Length
71 bp
Sequences
Splice sites
3' ss Seq
TGGATCCTCTTTCCCTCTAGCTG
3' ss Score
9.73
5' ss Seq
CCTGTACGC
5' ss Score
1.91
Exon sequences
Seq C1 exon
ATGGTGTCTGAGCTAAGAGACCACCTACTGAGACACCTGCAGGGTGTAGAAAAGAAGAAAATTGAACAGATGGTTCTGGACTACATTTCAAAACTG
Seq A exon
CTGGATCTCATTTGGTGCTTGCTGGAAACCAGTTGGAGGAAACACAGTATGCATCCATTGGTTCTCCACCT
Seq C2 exon
GATTGGCTGACCCAAGCCCTAAGCAAGCTCAGCGCTTGCTTTACTGACAGGATCAATCCATCCTCTCTGGAAGCTGGAGATGCTGGCTCGGCTCGTCATGTCTGCTTCTGTTCCACTCACCTAGGTTTCCACTCTCTGCACACGATCCTTGGGGTCCACTGCCTCCCTTTGTACAGCCTTCTGCACTACATTGATAACGGAGTGCTGCTGCTTACTGAGACCGCGGTCACGAGGCTTATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039934_MULTIEX3-2/3=1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149591=GSAP-16=PU(5.2=18.8)
A:
PF149591=GSAP-16=FE(20.0=100)
C2:
PF149591=GSAP-16=FE(34.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACTGAGACACCTGCAGGG
R:
CAGAAGCAGACATGACGAGCC
Band lengths:
183-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types