DreEX0036391 @ danRer10
Exon Skipping
Gene
ENSDARG00000045481 | gsap
Description
gamma-secretase activating protein [Source:ZFIN;Acc:ZDB-GENE-041210-216]
Coordinates
chr4:20486947-20488180:-
Coord C1 exon
chr4:20488085-20488180
Coord A exon
chr4:20487121-20487191
Coord C2 exon
chr4:20486947-20487041
Length
71 bp
Sequences
Splice sites
3' ss Seq
TGACTGTACTCTCTGTTAAGCTT
3' ss Score
6.44
5' ss Seq
CATGTATGT
5' ss Score
5.71
Exon sequences
Seq C1 exon
ATGGTTGACAAGCTCAGAGAACACTTGAACAGACATTTATCACGACTGGGGAAGAAGAAGATTGATTTGCTGGTGGTGAATTATGCTGCAAAGCTG
Seq A exon
CTTGAACTCATCTGGCACGTGTTGGAATTGGTGTGGCAGAAGCTGAAGTTGGGCCCTTGGGTGCTTTGCAT
Seq C2 exon
TAAGCAGCAGGGTAACTCGGAGGAATGGGCCATGTTTCATGTGATGTTTCGCATACTGGAAGCCACTAAAGGGCTCTGTCTTCCTCTTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045481_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149591=GSAP-16=PU(5.2=18.8)
A:
PF149591=GSAP-16=FE(20.0=100)
C2:
PF149591=GSAP-16=FE(27.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTGACAAGCTCAGAGAACAC
R:
AGAGCCCTTTAGTGGCTTCCA
Band lengths:
172-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]