BtaEX0027163 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018430 | PION
Description
Bos taurus pigeon homolog (Drosophila) (PION), mRNA. [Source:RefSeq mRNA;Acc:NM_001193061]
Coordinates
chr4:44136205-44145735:+
Coord C1 exon
chr4:44136205-44136275
Coord A exon
chr4:44136750-44136844
Coord C2 exon
chr4:44145616-44145735
Length
95 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTCTTTGACCTGCAGCAA
3' ss Score
8.9
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CTGGATCTCATTTGCCAAATACTGGAAGCCAGTTGGAGGAAACATAATCTTCATCCCTGGGCTCTCCACTT
Seq A exon
CAATAGACAGGCGAGTGCTGCTGAATTTGCGGTCTTTCACATCATGACCAGGATTTTGGAAGCTACTAACACTTTGTTTTTACCCCTGCCTCCTG
Seq C2 exon
GTTTTCACACTCTGCACATGATCCTTGGCGTCCGCTGTCTGCCTTTGCATAACCTGTTGCATTACATTGATCATGGAGTATTACTTCTCACAGAAGCAGCTGTCACAAGGCTCATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018430-'33-29,'33-28,35-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149591=GSAP-16=FE(20.0=100)
A:
PF149591=GSAP-16=FE(27.8=100)
C2:
PF149591=GSAP-16=FE(34.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAAGCCAGTTGGAGGAAA
R:
TCATGAGCCTTGTGACAGCTG
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development