DreEX6002495 @ danRer10
Exon Skipping
Gene
ENSDARG00000045481 | gsap
Description
gamma-secretase activating protein [Source:ZFIN;Acc:ZDB-GENE-041210-216]
Coordinates
chr4:20485342-20487191:-
Coord C1 exon
chr4:20487121-20487191
Coord A exon
chr4:20486947-20487041
Coord C2 exon
chr4:20485342-20485461
Length
95 bp
Sequences
Splice sites
3' ss Seq
AATTATTGTCTCTGTTATAGTAA
3' ss Score
6.61
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CTTGAACTCATCTGGCACGTGTTGGAATTGGTGTGGCAGAAGCTGAAGTTGGGCCCTTGGGTGCTTTGCAT
Seq A exon
TAAGCAGCAGGGTAACTCGGAGGAATGGGCCATGTTTCATGTGATGTTTCGCATACTGGAAGCCACTAAAGGGCTCTGTCTTCCTCTTCCTCCAG
Seq C2 exon
GTTATTCAACACTGTTAAGTGTTCTTGGAGTCCGTTGTCTCCCACAGCACACTTTTCTCCAGTATGTGGATCATGGCCTTCTTCAACTTACAGAACCATTTGTTTCACGCCTCATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045481-'20-23,'20-22,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149591=GSAP-16=FE(20.0=100)
A:
PF149591=GSAP-16=FE(27.8=100)
C2:
PF149591=GSAP-16=FE(34.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCTGGCACGTGTTGGAA
R:
GGCGTGAAACAAATGGTTCTGT
Band lengths:
176-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]