HsaEX6008604 @ hg19
Exon Skipping
Gene
ENSG00000186088 | PION
Description
pigeon homolog (Drosophila) [Source:HGNC Symbol;Acc:28042]
Coordinates
chr7:76943687-76950720:-
Coord C1 exon
chr7:76950650-76950720
Coord A exon
chr7:76950042-76950136
Coord C2 exon
chr7:76943687-76943806
Length
95 bp
Sequences
Splice sites
3' ss Seq
GCTTTGTTTTTTTTACCCAGCAA
3' ss Score
5.55
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CTGGATCTCATTTGCCACATCGTAGAAACCAATTGGAGGAAACATAATCTTCATTCCTGGGTTCTCCACTT
Seq A exon
CAATAGTCGTGGCAGTGCTGCTGAATTTGCAGTTTTTCACATCATGACCAGGATTCTGGAAGCTACAAACAGTTTGTTTTTACCTCTGCCTCCTG
Seq C2 exon
GTTTTCATACTCTGCACACCATCCTCGGGGTCCAGTGTCTCCCTTTGCATAACCTGCTGCATTGCATTGACAGTGGAGTGTTGCTTCTCACTGAAACAGCTGTCATAAGGCTCATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186088-'42-46,'42-42,43-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF042867=DUF445=FE(16.9=100),PF149591=GSAP-16=FE(23.2=100)
A:
PF042867=DUF445=PD(20.6=84.8),PF149591=GSAP-16=FE(32.3=100)
C2:
PF149591=GSAP-16=FE(57.1=100),PF041128=Mak10=PU(16.4=48.8),PF056127=DUF781=PU(23.9=53.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCTCATTTGCCACATCGT
R:
ACAGCTGTTTCAGTGAGAAGCA
Band lengths:
173-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)