GgaEX6000468 @ galGal3
Exon Skipping
Gene
ENSGALG00000008312 | PION
Description
NA
Coordinates
chr1:13682768-13684834:+
Coord C1 exon
chr1:13682768-13682838
Coord A exon
chr1:13683360-13683454
Coord C2 exon
chr1:13684715-13684834
Length
95 bp
Sequences
Splice sites
3' ss Seq
GTTCCTGTTTTGTTAAATAGTGA
3' ss Score
5.61
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
CTGAATCTGGTACATCGAATAATGAAAGAGGTTTGGAAGATACATCAGCTGCATTCCTGCATCTTCTGCTT
Seq A exon
TGATGAGAGAGGAAGTGAAGCAGAGTTCAGAGTGTTTCACATCATGAGTCGAATTCTGGAAGCTGCAAATGGCATGTGTATGCCTTTACCTCCTG
Seq C2 exon
GTTTTCACTCTCTACACTTGGGGCTTGGTGTTCGATGTCTCCCCCTTCATACTCTCCTGCACTATATTGACAATGGGGTTCTACATCTGACAGAAACCTGTGTCAGGAAACTGCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312-'30-36,'30-34,31-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149591=GSAP-16=FE(20.0=100)
A:
PF149591=GSAP-16=FE(27.8=100)
C2:
PF149591=GSAP-16=FE(34.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAGGTTTGGAAGATACATCAGCT
R:
CTTTCAGCAGTTTCCTGACACA
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]