BtaEX0027202 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007946 | PIPOX
Description
Bos taurus pipecolic acid oxidase (PIPOX), mRNA. [Source:RefSeq mRNA;Acc:NM_001014878]
Coordinates
chr19:20964785-20974156:+
Coord C1 exon
chr19:20964785-20964977
Coord A exon
chr19:20966224-20966372
Coord C2 exon
chr19:20973943-20974156
Length
149 bp
Sequences
Splice sites
3' ss Seq
CTCTTGCTCTCCCTCTCCAGTTC
3' ss Score
10.79
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
Exon sequences
Seq C1 exon
GAGCCTGCCTCCGCCGGCCCTCTCTGGTCTCTGAGGTCTGTGTGGTCTCTGAGGCTGTAGGGCTAATTCAGCGGGCAGGATGGCTGCTCAGAGGGAGCTCTATGACGCCATTGTGATCGGGGCAGGCATCCAGGGCTGCTTCACGGCGTACCACCTGGCCAAACACAGCAAGAAAGTCCTCCTGCTGGAGCAG
Seq A exon
TTCTTTCTCCCGCACTCCCGAGGAAGCTCCCATGGGCAGAGCCGGATCATCCGAAGGGCATACCCAGAAGATTTCTACACCCAGATGATGGCTGAGTGCTACTCCCTGTGGGCCCAGCTGGAGCATGAGGCGGGAACCCAATTATACAG
Seq C2 exon
GCAGACTGGACTACTGCTGCTGGGAATGAAGGAGAACCCAGAATTAAAGATAATCCAGGCTACTTTGTCGAGGCAGGGAGTGGAGCACCAGTGTCTTTCATCTGAGGAACTGAAGCAACGTTTCCCCAATATTCGGTTGGCCAGGGGAGAAGTGGGGCTCTTGGAGGTGTCCGGAGGAGTTCTCTATGCCGACAAGGCACTCAGAGCCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007946_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=PU(13.4=76.3)
A:
PF0126619=DAO=FE(13.7=100)
C2:
PF0126619=DAO=FE(19.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCTCTGAGGTCTGTGTGG
R:
CTGCCTCGACAAAGTAGCCTG
Band lengths:
245-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development